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Generic C++ implementations of pairw...

Yang, Xiao.

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Generic C++ implementations of pairwise sequence alignment: Instantiation for local alignment.

Record Type:	Electronic resources : Monograph/item
Title/Author:	Generic C++ implementations of pairwise sequence alignment: Instantiation for local alignment./
Author:	Yang, Xiao.
Description:	60 p.
Notes:	Source: Masters Abstracts International, Volume: 42-06, page: 2251.
Contained By:	Masters Abstracts International42-06.
Subject:	Computer Science. -
Online resource:	http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=MQ91147
ISBN:	0612911470

Generic C++ implementations of pairwise sequence alignment: Instantiation for local alignment.
Yang, Xiao.

Generic C++ implementations of pairwise sequence alignment: Instantiation for local alignment. - 60 p.

Source: Masters Abstracts International, Volume: 42-06, page: 2251.

Thesis (M.Comp.Sc.)--Concordia University (Canada), 2004.

Although there are already several C implementations of pairwise sequence alignment in the EMBOSS library for bioinformatics, all of them are quite independent of each other. The main purpose of this project is to develop a generic application to unify the different implementations and to provide the developer with the capability to develop a pairwise alignment algorithm with little effort.

ISBN: 0612911470Subjects--Topical Terms:

626642
Computer Science.

Generic C++ implementations of pairwise sequence alignment: Instantiation for local alignment.
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100 1 $a Yang, Xiao. $3 1927968
245 1 0 $a Generic C++ implementations of pairwise sequence alignment: Instantiation for local alignment.
300 $a 60 p.
500 $a Source: Masters Abstracts International, Volume: 42-06, page: 2251.
500 $a Adviser: Greg Butler.
502 $a Thesis (M.Comp.Sc.)--Concordia University (Canada), 2004.
520 $a Although there are already several C implementations of pairwise sequence alignment in the EMBOSS library for bioinformatics, all of them are quite independent of each other. The main purpose of this project is to develop a generic application to unify the different implementations and to provide the developer with the capability to develop a pairwise alignment algorithm with little effort.
520 $a C++ template technology provides high levels of performance and reusability of programming abstractions. The template mechanism in C++ is used in this project to achieve generic algorithm. An alignment algorithm is defined as a function object, which will be passed as a parameter to a generic implementation of dynamic programming. In this report, the local alignment algorithm of Smith-Waterman is instantiated.
520 $a This application provides two kinds of reusability: generic algorithm reusability and function objects reusability.
590 $a School code: 0228.
650 4 $a Computer Science. $3 626642
690 $a 0984
710 2 0 $a Concordia University (Canada). $3 1018569
773 0 $t Masters Abstracts International $g 42-06.
790 1 0 $a Butler, Greg, $e advisor
790 $a 0228
791 $a M.Comp.Sc.
792 $a 2004
856 4 0 $u http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=MQ91147