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Genetic diversity in cultivated and ...

Gutierrez, Lucia.

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Genetic diversity in cultivated and wild Hordeum species.

Record Type:	Language materials, printed : Monograph/item
Title/Author:	Genetic diversity in cultivated and wild Hordeum species./
Author:	Gutierrez, Lucia.
Description:	135 p.
Notes:	Advisers: Jean-Luc Jannink; John D. Nason.
Contained By:	Dissertation Abstracts International69-01B.
Subject:	Agriculture, Agronomy. -
Online resource:	http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=3296736
ISBN:	9780549412557

Genetic diversity in cultivated and wild Hordeum species.
Gutierrez, Lucia.

Genetic diversity in cultivated and wild Hordeum species. - 135 p.

Advisers: Jean-Luc Jannink; John D. Nason.

Thesis (Ph.D.)--Iowa State University, 2008.

Phenotypic selection can be tested by comparing the inter-population variation in quantitative traits (QST) against inter-population variation in neutral molecular markers (FST). A trait is considered under divergent selection when QST > FST, under stabilizing selection when QST < FST, and selectively neutral when QST = FST. This approach assumes the form of selection to be consistent across populations and can fail to detect selection mosaics in which this consistency is lacking. The overall objectives of this work are to improve the methodology for comparing QST and FST, and to study the relationship between QST and FST in cultivated and wild barley. First, we develop a methodology to detect situations in which the form of selection is heterogenous. The methodology simulates pair-wise QST under neutrality and focuses on the distribution of QST and FST. Our results indicate that studies employing traditional QST and FST methods are insensitive to mixtures of disruptive and stabilizing selection and that more powerful inference concerning the form of selection may be gained via the methods introduced here. Second, we use overall and pair-wise estimates to study the evolutionary history of quantitative traits in wild barley. We evaluate 14 traits and 56 SSR markers in 280 genotypes from 23 populations of wild barley from the Fertile Crescent. We find that a combination of overall and pair-wise comparisons is better suited than the former alone to understand the evolutionary processes that shape populations. Third, we propose the use of QST and F ST studies in cultivated barley. We use 66 polymorphic SSR and 20 quantitative traits in 353 genotypes of barley from 23 breeding programs distributed worldwide. By simultaneously estimating population structure at morphological traits and neutral molecular markers, we identify compatible breeding programs for germplasm exchange, and breeding programs with unique characteristics worth preserving. However, caution is advised in the use of this methodology for fitness-related traits, traits with important GxE, and germplasm with strong artificially-imposed structure especially in an artificial selection context as in breeding programs. In summary, we develop a methodology that is effective for detecting selection mosaics and we provided ample evidence of the occurrence of this phenomenon in both wild and cultivated barley.

ISBN: 9780549412557Subjects--Topical Terms:

1018679
Agriculture, Agronomy.

Genetic diversity in cultivated and wild Hordeum species.
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005 20110512
008 110512s2008 ||||||||||||||||| ||eng d
020 $a 9780549412557
035 $a (UMI)AAI3296736
035 $a AAI3296736
040 $a UMI $c UMI
100 1 $a Gutierrez, Lucia. $3 1263118
245 1 0 $a Genetic diversity in cultivated and wild Hordeum species.
300 $a 135 p.
500 $a Advisers: Jean-Luc Jannink; John D. Nason.
500 $a Source: Dissertation Abstracts International, Volume: 69-01, Section: B, page: 0074.
502 $a Thesis (Ph.D.)--Iowa State University, 2008.
520 $a Phenotypic selection can be tested by comparing the inter-population variation in quantitative traits (QST) against inter-population variation in neutral molecular markers (FST). A trait is considered under divergent selection when QST > FST, under stabilizing selection when QST < FST, and selectively neutral when QST = FST. This approach assumes the form of selection to be consistent across populations and can fail to detect selection mosaics in which this consistency is lacking. The overall objectives of this work are to improve the methodology for comparing QST and FST, and to study the relationship between QST and FST in cultivated and wild barley. First, we develop a methodology to detect situations in which the form of selection is heterogenous. The methodology simulates pair-wise QST under neutrality and focuses on the distribution of QST and FST. Our results indicate that studies employing traditional QST and FST methods are insensitive to mixtures of disruptive and stabilizing selection and that more powerful inference concerning the form of selection may be gained via the methods introduced here. Second, we use overall and pair-wise estimates to study the evolutionary history of quantitative traits in wild barley. We evaluate 14 traits and 56 SSR markers in 280 genotypes from 23 populations of wild barley from the Fertile Crescent. We find that a combination of overall and pair-wise comparisons is better suited than the former alone to understand the evolutionary processes that shape populations. Third, we propose the use of QST and F ST studies in cultivated barley. We use 66 polymorphic SSR and 20 quantitative traits in 353 genotypes of barley from 23 breeding programs distributed worldwide. By simultaneously estimating population structure at morphological traits and neutral molecular markers, we identify compatible breeding programs for germplasm exchange, and breeding programs with unique characteristics worth preserving. However, caution is advised in the use of this methodology for fitness-related traits, traits with important GxE, and germplasm with strong artificially-imposed structure especially in an artificial selection context as in breeding programs. In summary, we develop a methodology that is effective for detecting selection mosaics and we provided ample evidence of the occurrence of this phenomenon in both wild and cultivated barley.
590 $a School code: 0097.
650 4 $a Agriculture, Agronomy. $3 1018679
650 4 $a Biology, Bioinformatics. $3 1018415
650 4 $a Biology, Genetics. $3 1017730
690 $a 0285
690 $a 0369
690 $a 0715
710 2 $a Iowa State University. $b Agronomy. $3 1023712
773 0 $t Dissertation Abstracts International $g 69-01B.
790 $a 0097
790 1 0 $a Adams, Dean C. $e committee member
790 1 0 $a Dixon, Phillip $e committee member
790 1 0 $a Jannink, Jean-Luc, $e advisor
790 1 0 $a Lamkey, Kendall R. $e committee member
790 1 0 $a Nason, John D., $e advisor
791 $a Ph.D.
792 $a 2008
856 4 0 $u http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=3296736