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Architecture exploration of FPGA bas...

Varma, B. Sharat Chandra.

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Architecture exploration of FPGA based accelerators for bioInformatics applications

Record Type:	Electronic resources : Monograph/item
Title/Author:	Architecture exploration of FPGA based accelerators for bioInformatics applications/ by B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan.
Author:	Varma, B. Sharat Chandra.
other author:	Paul, Kolin.
Published:	Singapore :Springer Singapore : : 2016.,
Description:	xv, 122 p. :ill. (some col.), digital ;24 cm.
[NT 15003449]:	Introduction -- Related Work -- Methodology for Implementing Accelerators -- FPGA based Acceleration of Protein Docking -- FPGA based Acceleration of De Novo Genome Assembly -- Design of Accelerators with HEBs -- System Level Design Space Exploration -- Future Directions.
Contained By:	Springer eBooks
Subject:	Field programmable gate arrays. -
Online resource:	http://dx.doi.org/10.1007/978-981-10-0591-6
ISBN:	9789811005916

Architecture exploration of FPGA based accelerators for bioInformatics applications
Varma, B. Sharat Chandra.

Architecture exploration of FPGA based accelerators for bioInformatics applications[electronic resource] /by B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan. - Singapore :Springer Singapore :2016. - xv, 122 p. :ill. (some col.), digital ;24 cm. - Springer series in advanced microelectronics,v.551437-0387 ;. - Springer series in advanced microelectronics ;33..

Introduction -- Related Work -- Methodology for Implementing Accelerators -- FPGA based Acceleration of Protein Docking -- FPGA based Acceleration of De Novo Genome Assembly -- Design of Accelerators with HEBs -- System Level Design Space Exploration -- Future Directions.

This book presents an evaluation methodology to design future FPGA fabrics incorporating hard embedded blocks (HEBs) to accelerate applications. This methodology will be useful for selection of blocks to be embedded into the fabric and for evaluating the performance gain that can be achieved by such an embedding. The authors illustrate the use of their methodology by studying the impact of HEBs on two important bioinformatics applications: protein docking and genome assembly. The book also explains how the respective HEBs are designed and how hardware implementation of the application is done using these HEBs. It shows that significant speedups can be achieved over pure software implementations by using such FPGA-based accelerators. The methodology presented in this book may also be used for designing HEBs for accelerating software implementations in other domains besides bioinformatics. This book will prove useful to students, researchers, and practicing engineers alike.

ISBN: 9789811005916

Standard No.: 10.1007/978-981-10-0591-6doiSubjects--Topical Terms:

666370
Field programmable gate arrays.

LC Class. No.: TK7895.G36

Dewey Class. No.: 621.395

Architecture exploration of FPGA based accelerators for bioInformatics applications
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520 $a This book presents an evaluation methodology to design future FPGA fabrics incorporating hard embedded blocks (HEBs) to accelerate applications. This methodology will be useful for selection of blocks to be embedded into the fabric and for evaluating the performance gain that can be achieved by such an embedding. The authors illustrate the use of their methodology by studying the impact of HEBs on two important bioinformatics applications: protein docking and genome assembly. The book also explains how the respective HEBs are designed and how hardware implementation of the application is done using these HEBs. It shows that significant speedups can be achieved over pure software implementations by using such FPGA-based accelerators. The methodology presented in this book may also be used for designing HEBs for accelerating software implementations in other domains besides bioinformatics. This book will prove useful to students, researchers, and practicing engineers alike.
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