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Ultrafast multidimensional vibration...

Merchant, Kusai Abid.

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Ultrafast multidimensional vibrational spectroscopy: Experimental and theoretical studies on proteins and model compounds.

Record Type:	Electronic resources : Monograph/item
Title/Author:	Ultrafast multidimensional vibrational spectroscopy: Experimental and theoretical studies on proteins and model compounds./
Author:	Merchant, Kusai Abid.
Description:	155 p.
Notes:	Source: Dissertation Abstracts International, Volume: 64-11, Section: B, page: 5543.
Contained By:	Dissertation Abstracts International64-11B.
Subject:	Chemistry, Physical. -
Online resource:	http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=3111762

Ultrafast multidimensional vibrational spectroscopy: Experimental and theoretical studies on proteins and model compounds.
Merchant, Kusai Abid.

Ultrafast multidimensional vibrational spectroscopy: Experimental and theoretical studies on proteins and model compounds. - 155 p.

Source: Dissertation Abstracts International, Volume: 64-11, Section: B, page: 5543.

Thesis (Ph.D.)--Stanford University, 2004.

Ultrafast multidimensional vibrational echo techniques have been developed both experimentally and theoretically and used to probe dynamics in condensed phased systems. In particular, experiments have focused on the ultrafast dynamics of myoglobin-CO (MbCO), and on a model inorganic dicarbonyl, acetylacetonatodicarbonyl rhodium I (Rh(CO)2acac) dissolved in organic glasses. Experiments have shown that the standard description of beating phenomena seen in nonlinear experiments is inadequate, and has led to a new unified theoretical description of beating which explains all oscillatory behavior seen in third-order nonlinear spectroscopies.Subjects--Topical Terms:

560527
Chemistry, Physical.

Ultrafast multidimensional vibrational spectroscopy: Experimental and theoretical studies on proteins and model compounds.
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035 $a (UnM)AAI3111762
035 $a AAI3111762
040 $a UnM $c UnM
100 1 $a Merchant, Kusai Abid. $3 1952449
245 1 0 $a Ultrafast multidimensional vibrational spectroscopy: Experimental and theoretical studies on proteins and model compounds.
300 $a 155 p.
500 $a Source: Dissertation Abstracts International, Volume: 64-11, Section: B, page: 5543.
500 $a Adviser: Michael D. Fayer.
502 $a Thesis (Ph.D.)--Stanford University, 2004.
520 $a Ultrafast multidimensional vibrational echo techniques have been developed both experimentally and theoretically and used to probe dynamics in condensed phased systems. In particular, experiments have focused on the ultrafast dynamics of myoglobin-CO (MbCO), and on a model inorganic dicarbonyl, acetylacetonatodicarbonyl rhodium I (Rh(CO)2acac) dissolved in organic glasses. Experiments have shown that the standard description of beating phenomena seen in nonlinear experiments is inadequate, and has led to a new unified theoretical description of beating which explains all oscillatory behavior seen in third-order nonlinear spectroscopies.
520 $a Experiments on Rh(CO)2acac have probed the nature of the solute-solvent interaction, and the mechanisms for inhomogeneous broadening. The CO stretching modes in Rh(CO)2acac are coupled. Spectrally resolved vibrational echo decays on this system with short pulses exhibit quantum beats with a quantum beat frequency that depends on the detection frequency for each transition, which is indicative of the mechanism of inhomogeneous broadening in the system. The experiments were interpreted in the context of a model for coupled harmonic oscillators, and indicate that solute/solvent interactions lead to local CO stretch frequency perturbations that are correlated.
520 $a Multidimensional vibrational echo experiments on MbCO have led to the structural assignments of the conformational substrates seen in MbCO. The IR spectrum of the CO stretch of MbCO shows multiple bands, which correspond to slightly different conformations of the protein. Using multidimensional vibrational echo experiments in combination with molecular dynamics (MD) simulations, the structural origins for the IR absorption bands seen in MbCO have been assigned. Different conformational substates of the protein give rise to different dynamical line shapes for CO. The dynamical line shape for each band in the CO IR spectrum in MbCO acts as a signature for a particular protein structure. By comparing the dynamical line shapes measured with vibrational echo experiments and the dynamical line shapes calculated from molecular dynamics simulations for different possible conformations of the protein, it is possible to distinguish between possible "candidate" structures for the protein. This approach has determined the structural origins of the different bands seen in the infrared spectrum, and quantified the sources of dephasing for CO with atomic level detail.
590 $a School code: 0212.
650 4 $a Chemistry, Physical. $3 560527
650 4 $a Biophysics, General. $3 1019105
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710 2 0 $a Stanford University. $3 754827
773 0 $t Dissertation Abstracts International $g 64-11B.
790 1 0 $a Fayer, Michael D., $e advisor
790 $a 0212
791 $a Ph.D.
792 $a 2004
856 4 0 $u http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=3111762