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Structural bioinformatics based meth...

Thyparambil, Aby Abraham.

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Structural bioinformatics based method for predicting the initial adsorbed protein orientation on a surface.

Record Type:	Language materials, printed : Monograph/item
Title/Author:	Structural bioinformatics based method for predicting the initial adsorbed protein orientation on a surface./
Author:	Thyparambil, Aby Abraham.
Description:	137 p.
Notes:	Source: Masters Abstracts International, Volume: 49-01, page: 0531.
Contained By:	Masters Abstracts International49-01.
Subject:	Engineering, Biomedical. -
Online resource:	http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=1480642
ISBN:	9781124190921

Structural bioinformatics based method for predicting the initial adsorbed protein orientation on a surface.
Thyparambil, Aby Abraham.

Structural bioinformatics based method for predicting the initial adsorbed protein orientation on a surface. - 137 p.

Source: Masters Abstracts International, Volume: 49-01, page: 0531.

Thesis (M.S.)--Clemson University, 2010.

In any molecular simulation of protein-surface interaction, the selection of the initial orientation with which the protein would interact with the surface must be first made and is found to be critical in the determination of the bioactive state of the adsorbed protein. While various molecular simulation methods have been developed to identify the preferred orientation, these methods are generally computationally expensive and time consuming, especially for large molecules thereby motivating the current study.

ISBN: 9781124190921Subjects--Topical Terms:

1017684
Engineering, Biomedical.

Structural bioinformatics based method for predicting the initial adsorbed protein orientation on a surface.
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020 $a 9781124190921
035 $a (UMI)AAI1480642
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100 1 $a Thyparambil, Aby Abraham. $3 1681404
245 1 0 $a Structural bioinformatics based method for predicting the initial adsorbed protein orientation on a surface.
300 $a 137 p.
500 $a Source: Masters Abstracts International, Volume: 49-01, page: 0531.
500 $a Adviser: Robert A. Latour.
502 $a Thesis (M.S.)--Clemson University, 2010.
520 $a In any molecular simulation of protein-surface interaction, the selection of the initial orientation with which the protein would interact with the surface must be first made and is found to be critical in the determination of the bioactive state of the adsorbed protein. While various molecular simulation methods have been developed to identify the preferred orientation, these methods are generally computationally expensive and time consuming, especially for large molecules thereby motivating the current study.
520 $a The computational implementation for identifying a preferred orientation was done in MATLABRTM and directly addresses the current research problem by assuming the protein to be rigid and mapping the number of solvent accessible residues that would interact with the surface as a function of orientation, thereby yielding a topography map that would reveal the potential minimum energy orientations for a given protein-interface interaction system. The protein orientation prediction has been performed for a wide range of proteins (11kDa--300kDa) and surfaces (hydrophobic, hydrophilic, charged, biological-membranes) with the total runtime involved usually averaging in minutes. These results were also found to be in good agreement with the experimental and simulation results reported in the literature for biological and man-made materials. Besides the intended application for the support to molecular simulations, this program also has the general application of surface design to control the bioactive state of adsorbed proteins and to selectively target and immobilize protein in a controlled orientation.
590 $a School code: 0050.
650 4 $a Engineering, Biomedical. $3 1017684
650 4 $a Biology, Bioinformatics. $3 1018415
650 4 $a Biophysics, General. $3 1019105
690 $a 0541
690 $a 0715
690 $a 0786
710 2 $a Clemson University. $b Bioengineering. $3 1058001
773 0 $t Masters Abstracts International $g 49-01.
790 1 0 $a Latour, Robert A., $e advisor
790 1 0 $a Vertegel, Alexey $e committee member
790 1 0 $a Dean, Delphine $e committee member
790 $a 0050
791 $a M.S.
792 $a 2010
856 4 0 $u http://pqdd.sinica.edu.tw/twdaoapp/servlet/advanced?query=1480642